miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|125608167|gb|EL556658.1|EL556658 GGGTGTTGATTGTACTTTATTAATACCAGAAGGAGAAAGTAGTCATTACAGCCGTAGCAACAAACAAAATGTGCATGGTA
AGGTTAGGCTGTCATTTGTTACTGGCTACATAAGCAGTTAATTTACAATTGCAAAACACAAATCCGCATTTATAGAGCAT
TGAGAACAAATTATCTTTAACTAAAAAGCTGGATGGCATTTATCTTGATGAGTCCGCAAACGGTCTCTACGATTGAAAGC
TTTCCCACAATCCGTACATTGGTAAGGCTTCTCTCCTGTGTGCGTTTTCATGTGTCTGCTCAACTGATGGGAGGTGCTGA
AGGACTTGTTGCAAGTGAGACACGAATACGGTTTCTCCCCGGTATGACTTCGCCGGTGTATGGTGAGATAATGGGCTTGA
ACAAAACCCTTCCCACAGTCCTTGCACTTGAATGGCCGGTCTCCAGTATGGTATCTCATGTGTATCCTCAGTTCAGATGC
AGATTTGAAAACTCTGGTACATTCCTTATATGTGCAGGAATAAGGATTCTCCCCTGTGTGAATCAATACGTGTCTCGCCA
ATGGGGCAGGGCTATAGAATCCCTTACCGCAGTAGGAGCACGGGTAACGCACCCCTTTGTGATATACAATCTCATGCATC
TTCATTTGACCTTTGTCCCTG




Most similar to sp|Q96MU6|ZN778_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q96MU6|ZN778_HUMAN Zinc finger protein 778 OS=Homo sapiens
           GN=ZNF778 PE=2 SV=3
          Length = 729

 Score =  168 bits (425), Expect = 3e-41
 Identities = 78/160 (48%), Positives = 104/160 (65%), Gaps = 5/160 (3%)
 Frame = -2

Query: 621 HKGVR-YPCSYCGKGFYSPAPLARHVLIHTGENPYSCTYKECTRVFKSASELRIHMRYHT 445
           H G++ Y CSYCGK F     L RHV  HTGE PY+C  K+C + F ++S L  H+R HT
Sbjct: 387 HTGIKPYTCSYCGKAFTVRCGLTRHVRTHTGEKPYTC--KDCGKAFCTSSGLTEHVRTHT 444

Query: 444 GDRPFKCKDCGKGFVQAHYLTIHRRSHTGEKPYSCLTCNKSFSTSHQLSRHMKTHTGEKP 265
           G++P++CKDCGK F  +  LT H R HTGEKPY C  C K+F+    L++HM+THTGEKP
Sbjct: 445 GEKPYECKDCGKSFTVSSSLTEHARIHTGEKPYECKQCGKAFTGRSGLTKHMRTHTGEKP 504

Query: 264 YQCTDCGKAFNR----RDRLRTHQDKCHPAF*LKIICSQC 157
           Y+C DCGKA+NR     + ++TH ++         IC+ C
Sbjct: 505 YECKDCGKAYNRVYLLNEHVKTHTEE------KPFICTVC 538



 Score =  154 bits (390), Expect = 4e-37
 Identities = 68/142 (47%), Positives = 92/142 (64%), Gaps = 1/142 (0%)
 Frame = -2

Query: 630 IVYHKGVR-YPCSYCGKGFYSPAPLARHVLIHTGENPYSCTYKECTRVFKSASELRIHMR 454
           I  H G++ Y C  CGK F   + L  H+  HTGE PY C  K C + F ++S L +H+R
Sbjct: 552 IQIHTGIKPYECKDCGKTFTVSSSLTEHIRTHTGEKPYEC--KVCGKAFTTSSHLIVHIR 609

Query: 453 YHTGDRPFKCKDCGKGFVQAHYLTIHRRSHTGEKPYSCLTCNKSFSTSHQLSRHMKTHTG 274
            HTG++P+ CK+CGK F  + +L  HRR+HTGEKPY C  C K+F  S  L +H + HTG
Sbjct: 610 THTGEKPYICKECGKAFASSSHLIEHRRTHTGEKPYICNECGKAFRASSHLHKHGRIHTG 669

Query: 273 EKPYQCTDCGKAFNRRDRLRTH 208
           +KPY+C +CGKA+NR   L+ H
Sbjct: 670 QKPYKCKECGKAYNRFYLLKEH 691



 Score =  144 bits (363), Expect = 5e-34
 Identities = 65/139 (46%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
 Frame = -2

Query: 621 HKGVR-YPCSYCGKGFYSPAPLARHVLIHTGENPYSCTYKECTRVFKSASELRIHMRYHT 445
           H G + Y C  CGK F   + L  H  IHTGE PY C  K+C + F   S L  HMR HT
Sbjct: 443 HTGEKPYECKDCGKSFTVSSSLTEHARIHTGEKPYEC--KQCGKAFTGRSGLTKHMRTHT 500

Query: 444 GDRPFKCKDCGKGFVQAHYLTIHRRSHTGEKPYSCLTCNKSFSTSHQLSRHMKTHTGEKP 265
           G++P++CKDCGK + + + L  H ++HT EKP+ C  C KSF  S  L++H++ HTG KP
Sbjct: 501 GEKPYECKDCGKAYNRVYLLNEHVKTHTEEKPFICTVCRKSFRNSSCLNKHIQIHTGIKP 560

Query: 264 YQCTDCGKAFNRRDRLRTH 208
           Y+C DCGK F     L  H
Sbjct: 561 YECKDCGKTFTVSSSLTEH 579



 Score =  142 bits (357), Expect = 3e-33
 Identities = 71/156 (45%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
 Frame = -2

Query: 621 HKGVR-YPCSYCGKGFYSPAPLARHVLIHTGENPYSCTYKECTRVFKSASELRIHMRYHT 445
           H G + Y C  CGK +     L  HV  HT E P+ CT   C + F+++S L  H++ HT
Sbjct: 499 HTGEKPYECKDCGKAYNRVYLLNEHVKTHTEEKPFICTV--CRKSFRNSSCLNKHIQIHT 556

Query: 444 GDRPFKCKDCGKGFVQAHYLTIHRRSHTGEKPYSCLTCNKSFSTSHQLSRHMKTHTGEKP 265
           G +P++CKDCGK F  +  LT H R+HTGEKPY C  C K+F+TS  L  H++THTGEKP
Sbjct: 557 GIKPYECKDCGKTFTVSSSLTEHIRTHTGEKPYECKVCGKAFTTSSHLIVHIRTHTGEKP 616

Query: 264 YQCTDCGKAFNRRDRLRTHQDKCHPAF*LKIICSQC 157
           Y C +CGKAF     L  H+ + H       IC++C
Sbjct: 617 YICKECGKAFASSSHLIEHR-RTHTGE-KPYICNEC 650



 Score =  133 bits (335), Expect = 9e-31
 Identities = 61/139 (43%), Positives = 83/139 (59%), Gaps = 1/139 (0%)
 Frame = -2

Query: 621 HKGVR-YPCSYCGKGFYSPAPLARHVLIHTGENPYSCTYKECTRVFKSASELRIHMRYHT 445
           H G + Y C  CGK F + + L  H+  HTGE PY C  KEC + F S+S L  H R HT
Sbjct: 583 HTGEKPYECKVCGKAFTTSSHLIVHIRTHTGEKPYIC--KECGKAFASSSHLIEHRRTHT 640

Query: 444 GDRPFKCKDCGKGFVQAHYLTIHRRSHTGEKPYSCLTCNKSFSTSHQLSRHMKTHTGEKP 265
           G++P+ C +CGK F  + +L  H R HTG+KPY C  C K+++  + L  H+KT+T E+ 
Sbjct: 641 GEKPYICNECGKAFRASSHLHKHGRIHTGQKPYKCKECGKAYNRFYLLKEHLKTYTEEQV 700

Query: 264 YQCTDCGKAFNRRDRLRTH 208
           + C DCGK+F     L  H
Sbjct: 701 FVCKDCGKSFKNSSCLNHH 719



 Score =  133 bits (334), Expect = 1e-30
 Identities = 65/136 (47%), Positives = 82/136 (60%), Gaps = 3/136 (2%)
 Frame = -2

Query: 606 YPCSYCGK---GFYSPAPLARHVLIHTGENPYSCTYKECTRVFKSASELRIHMRYHTGDR 436
           Y C  CGK   GFY    L  H   HT E P++C    C + F+++S L  H+R HTG +
Sbjct: 337 YECKDCGKACGGFYL---LNEHGKTHTREKPFACVV--CGKYFRNSSCLNNHVRIHTGIK 391

Query: 435 PFKCKDCGKGFVQAHYLTIHRRSHTGEKPYSCLTCNKSFSTSHQLSRHMKTHTGEKPYQC 256
           P+ C  CGK F     LT H R+HTGEKPY+C  C K+F TS  L+ H++THTGEKPY+C
Sbjct: 392 PYTCSYCGKAFTVRCGLTRHVRTHTGEKPYTCKDCGKAFCTSSGLTEHVRTHTGEKPYEC 451

Query: 255 TDCGKAFNRRDRLRTH 208
            DCGK+F     L  H
Sbjct: 452 KDCGKSFTVSSSLTEH 467



 Score =  117 bits (292), Expect = 9e-26
 Identities = 59/140 (42%), Positives = 78/140 (55%), Gaps = 2/140 (1%)
 Frame = -2

Query: 621 HKGVRYPCSY--CGKGFYSPAPLARHVLIHTGENPYSCTYKECTRVFKSASELRIHMRYH 448
           H G + PC    CGK     + L +HV IH  E P  C  KEC + F   S L  H++  
Sbjct: 275 HPGEK-PCELEECGKASPVSSSLTQHVRIHAAEKPCEC--KECGKAFTGLSGLSKHVQTD 331

Query: 447 TGDRPFKCKDCGKGFVQAHYLTIHRRSHTGEKPYSCLTCNKSFSTSHQLSRHMKTHTGEK 268
            G +P++CKDCGK     + L  H ++HT EKP++C+ C K F  S  L+ H++ HTG K
Sbjct: 332 PGQKPYECKDCGKACGGFYLLNEHGKTHTREKPFACVVCGKYFRNSSCLNNHVRIHTGIK 391

Query: 267 PYQCTDCGKAFNRRDRLRTH 208
           PY C+ CGKAF  R  L  H
Sbjct: 392 PYTCSYCGKAFTVRCGLTRH 411



 Score =  112 bits (279), Expect = 3e-24
 Identities = 55/129 (42%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
 Frame = -2

Query: 636 HEIVY---HKGVR-YPCSYCGKGFYSPAPLARHVLIHTGENPYSCTYKECTRVFKSASEL 469
           H IV+   H G + Y C  CGK F S + L  H   HTGE PY C   EC + F+++S L
Sbjct: 603 HLIVHIRTHTGEKPYICKECGKAFASSSHLIEHRRTHTGEKPYICN--ECGKAFRASSHL 660

Query: 468 RIHMRYHTGDRPFKCKDCGKGFVQAHYLTIHRRSHTGEKPYSCLTCNKSFSTSHQLSRHM 289
             H R HTG +P+KCK+CGK + + + L  H +++T E+ + C  C KSF  S  L+ H 
Sbjct: 661 HKHGRIHTGQKPYKCKECGKAYNRFYLLKEHLKTYTEEQVFVCKDCGKSFKNSSCLNHHT 720

Query: 288 KTHTGEKPY 262
           + HT EKP+
Sbjct: 721 QIHTDEKPF 729



 Score =  109 bits (273), Expect = 1e-23
 Identities = 55/137 (40%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
 Frame = -2

Query: 612 VRYP--CSYCGKGFYSPAPLARHVLIHTGENPYSCTYKECTRVFKSASELRIHMRYHTGD 439
           VR P  C  CGK F   A L   V +H GE P  C  +EC +    +S L  H+R H  +
Sbjct: 249 VRNPHVCRECGKAFRYTAYLTGRVQVHPGEKP--CELEECGKASPVSSSLTQHVRIHAAE 306

Query: 438 RPFKCKDCGKGFVQAHYLTIHRRSHTGEKPYSCLTCNKSFSTSHQLSRHMKTHTGEKPYQ 259
           +P +CK+CGK F     L+ H ++  G+KPY C  C K+    + L+ H KTHT EKP+ 
Sbjct: 307 KPCECKECGKAFTGLSGLSKHVQTDPGQKPYECKDCGKACGGFYLLNEHGKTHTREKPFA 366

Query: 258 CTDCGKAFNRRDRLRTH 208
           C  CGK F     L  H
Sbjct: 367 CVVCGKYFRNSSCLNNH 383